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tofu-7 K Homology domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 175988, updated on 2-Nov-2024

Summary

Official Symbol
tofu-7
Official Full Name
K Homology domain-containing protein
Primary source
WormBase:WBGene00022737
Locus tag
CELE_ZK418.8
See related
AllianceGenome:WB:WBGene00022737
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA processing and regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See tofu-7 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (7083684..7085018, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene ncRNA Neighboring gene K Homology domain-containing protein Neighboring gene NR LBD domain-containing protein

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
K Homology domain-containing protein
NP_498547.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7083684..7085018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066146.8NP_498547.1  K Homology domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498547.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q23486
    Conserved Domains (2) summary
    smart00322
    Location:59110
    KH; K homology RNA-binding domain
    pfam00013
    Location:165216
    KH_1; KH domain