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col-90 Putative cuticle collagen 90 [ Caenorhabditis elegans ]

Gene ID: 176117, updated on 2-Nov-2024

Summary

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Official Symbol
col-90
Official Full Name
Putative cuticle collagen 90
Primary source
WormBase:WBGene00000665
Locus tag
CELE_C29E4.1
See related
AllianceGenome:WB:WBGene00000665
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-90 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003281.10 (7948838..7950068)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Protein FMC1 homolog Neighboring gene Condensin-2 complex subunit kle-2 Neighboring gene Glutathione transferase omega-1 Neighboring gene Adenylate kinase Neighboring gene DUF2189 domain-containing protein Neighboring gene C6 domain-containing protein Neighboring gene DUF1752 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SGPL1 stimulates VPS39 recruitment to the mitochondria in MICU1 deficient cells. Jackson J, et al. Mol Metab, 2022 Jul. PMID 35452878, Free PMC Article
  2. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Putative cuticle collagen 90
NP_498729.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7948838..7950068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066328.6 → NP_498729.1  Putative cuticle collagen 90 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498729.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34340
    Conserved Domains (2) summary
    pfam01391
    Location:208 → 267
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:3 → 55
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34340.1

Gene LinkOut

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