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hrpk-2 KH domain-containing protein C06G4.1 [ Caenorhabditis elegans ]

Gene ID: 176123, updated on 2-Nov-2024

Summary

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Official Symbol
hrpk-2
Official Full Name
KH domain-containing protein C06G4.1
Primary source
WormBase:WBGene00015557
Locus tag
CELE_C06G4.1
See related
AllianceGenome:WB:WBGene00015557
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in nervous system development. Predicted to be active in cytosol and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See hrpk-2 in Genome Data Viewer
Location:
chromosome: III
Exon count:
11
Sequence:
Chromosome: III; NC_003281.10 (7987121..7990602)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene tRNA-Phe Neighboring gene ncRNA Neighboring gene Calpain clp-1 Neighboring gene putative G-protein coupled receptor C06G4.5 Neighboring gene Uncharacterized protein Neighboring gene Cyclin-T1.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Microtubule severing by the katanin complex is activated by PPFR-1-dependent MEI-1 dephosphorylation. Gomes JE, et al. J Cell Biol, 2013 Aug 5. PMID 23918937, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in nervous system development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
KH domain-containing protein C06G4.1
NP_498742.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7987121..7990602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066341.5 → NP_498742.1  KH domain-containing protein C06G4.1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498742.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34307
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34307.2

Gene LinkOut

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