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rpn-6.2 putative 26S proteasome regulatory subunit rpn-6.2 [ Caenorhabditis elegans ]

Gene ID: 176273, updated on 2-Nov-2024

Summary

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Official Symbol
rpn-6.2
Official Full Name
putative 26S proteasome regulatory subunit rpn-6.2
Primary source
WormBase:WBGene00010309
Locus tag
CELE_F59B2.5
See related
AllianceGenome:WB:WBGene00010309
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable structural molecule activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle, lid subcomplex. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rpn-6.2 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (8999817..9001999, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene putative sugar kinase R08D7.7 Neighboring gene putative amino acid transporter skat-1 Neighboring gene N-acetylglucosamine-6-phosphate deacetylase Neighboring gene Secreted protein Neighboring gene Zinc finger-interacting factor 1 Neighboring gene Ras-related protein rab-6.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural molecule activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome regulatory particle, lid subcomplex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative 26S proteasome regulatory subunit rpn-6.2
NP_001254972.1
  • Confirmed by transcript evidence
NP_001254973.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    8999817..9001999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001268043.2 → NP_001254972.1  putative 26S proteasome regulatory subunit rpn-6.2 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254972.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0P266, C0P267, P34481
    Conserved Domains (1) summary
    COG5159
    Location:14 → 411
    RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

  2. NM_001268044.3 → NP_001254973.1  putative 26S proteasome regulatory subunit rpn-6.2 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254973.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34481
    Conserved Domains (1) summary
    COG5159
    Location:1 → 208
    RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34481.3

Gene LinkOut

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