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clip-1 CAP-Gly domain-containing linker protein 1 homolog [ Caenorhabditis elegans ]

Gene ID: 176307, updated on 2-Nov-2024

Summary

Official Symbol
clip-1
Official Full Name
CAP-Gly domain-containing linker protein 1 homolog
Primary source
WormBase:WBGene00010796
Locus tag
CELE_M01A8.2
See related
AllianceGenome:WB:WBGene00010796
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Enables microtubule binding activity. Involved in nucleus localization and nucleus organization. Located in nuclear envelope. Is expressed in pharynx. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See clip-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
20
Sequence:
Chromosome: III; NC_003281.10 (9260175..9269062, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene putative RING finger protein T02C1.1 Neighboring gene RING-type E3 ubiquitin transferase Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Formin-homology and zinc finger domains protein 1 Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables microtubule binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in establishment of mitotic spindle orientation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in nuclear migration IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in nucleus localization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in nucleus organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in axon IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in kinetochore IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of microtubule associated complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in spindle pole IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
CAP-Gly domain-containing linker protein 1 homolog
NP_001022682.1
  • Confirmed by transcript evidence
NP_001022683.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    9260175..9269062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001027511.6NP_001022682.1  CAP-Gly domain-containing linker protein 1 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022682.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34531, P34532, P34533, Q65ZC5
    Conserved Domains (1) summary
    pfam01302
    Location:2285
    CAP_GLY; CAP-Gly domain
  2. NM_001027512.7NP_001022683.1  CAP-Gly domain-containing linker protein 1 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022683.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34531
    Conserved Domains (1) summary
    pfam01302
    Location:2285
    CAP_GLY; CAP-Gly domain