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ttr-5 Transthyretin-like protein 5 [ Caenorhabditis elegans ]

Gene ID: 176312, updated on 2-Nov-2024

Summary

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Official Symbol
ttr-5
Official Full Name
Transthyretin-like protein 5
Primary source
WormBase:WBGene00008040
Locus tag
CELE_C40H1.5
See related
AllianceGenome:WB:WBGene00008040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in cell surface and extracellular region. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ttr-5 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003281.10 (9330316..9330928)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Fungal lipase-like domain-containing protein;Lipase_3 domain-containing protein Neighboring gene CEntrosomal Protein Related Neighboring gene ncRNA Neighboring gene Ubiquitin-fold modifier-conjugating enzyme 1 Neighboring gene Putative fatty acid elongase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of protein domain families in Caenorhabditis elegans. Sonnhammer EL, et al. Genomics, 1997 Dec 1. PMID 9417907
  2. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
  3. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
  4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
  
is_active_in cellular_component ND
No biological Data available
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transthyretin-like protein 5
NP_499054.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    9330316..9330928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066653.4 → NP_499054.1  Transthyretin-like protein 5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499054.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q03575
    Conserved Domains (1) summary
    pfam01060
    Location:26 → 105
    TTR-52; Transthyretin-like family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q03575.1

Gene LinkOut

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