chtb-1 CHiTin Binding domain (ChtBD2) containing [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: chtb-1
Official Full Name: CHiTin Binding domain (ChtBD2) containing
Primary source: WormBase:WBGene00010573
Locus tag: CELE_K04H4.2
See related: AllianceGenome:WB:WBGene00010573
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable chitin binding activity. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See chtb-1 in Genome Data Viewer

Location:: chromosome: III

Exon count:: 22

Sequence:: Chromosome: III; NC_003281.10 (9347768..9355462, complement)

Chromosome III - NC_003281.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

K04H4.2 (e-PCR)
- UniSTS:317504

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables chitin binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: CHiTin Binding domain (ChtBD2) containing

NP_001367094.1

Confirmed by transcript evidence;
Product from WormBase gene class chtb

NP_001369838.1

Confirmed by transcript evidence;
Product from WormBase gene class chtb

NP_001369839.1

Confirmed by transcript evidence;
Product from WormBase gene class chtb

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003281.10 Reference assembly

Range

9347768..9355462 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001382960.1 → NP_001369839.1 CHiTin Binding domain (ChtBD2) containing [Caenorhabditis elegans]

Status: REVIEWED

Conserved Domains (1) summary

smart00494
Location:107 → 157

ChtBD2; Chitin-binding domain type 2
NM_001382959.2 → NP_001369838.1 CHiTin Binding domain (ChtBD2) containing [Caenorhabditis elegans]

Status: REVIEWED

Conserved Domains (1) summary

smart00494
Location:107 → 157

ChtBD2; Chitin-binding domain type 2
NM_001379858.1 → NP_001367094.1 CHiTin Binding domain (ChtBD2) containing [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/Swiss-Prot

P34504, P34505, P34506, P90907, Q6BEV9