U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ctr-9 RNA polymerase-associated protein CTR9 [ Caenorhabditis elegans ]

Gene ID: 176335, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ctr-9
Official Full Name
RNA polymerase-associated protein CTR9
Primary source
WormBase:WBGene00007184
Locus tag
CELE_B0464.2
See related
AllianceGenome:WB:WBGene00007184
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in transcription elongation by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Cdc73/Paf1 complex. Orthologous to human CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ctr-9 in Genome Data Viewer
Location:
chromosome: III
Exon count:
7
Sequence:
Chromosome: III; NC_003281.10 (9491640..9497044)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Beta-1,4-mannosyltransferase bre-3 Neighboring gene Neuropeptide-like peptide 36 Neighboring gene Aspartate--tRNA ligase, cytoplasmic Neighboring gene Extracellular superoxide dismutase [Cu-Zn];Superoxide dismutase [Cu-Zn] Neighboring gene pseudo Neighboring gene V-type proton ATPase subunit D

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The PAF1 complex is involved in embryonic epidermal morphogenesis in Caenorhabditis elegans. Kubota Y, et al. Dev Biol, 2014 Jul 1. PMID 24721716
  2. The PAF1 complex cell autonomously promotes oogenesis in Caenorhabditis elegans. Kubota Y, et al. Genes Cells, 2022 Jun. PMID 35430776, Free PMC Article
  3. Casein Kinase 1δ Stabilizes Mature Axons by Inhibiting Transcription Termination of Ankyrin. LaBella ML, et al. Dev Cell, 2020 Jan 6. PMID 31910362, Free PMC Article
  4. Robust co-immunoprecipitation with mass spectrometry for Caenorhabditis elegans using solid-phase enhanced sample preparation. Baytek G, et al. Biotechniques, 2022 May. PMID 35297663
  5. FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. Kolundzic E, et al. Dev Cell, 2018 Sep 10. PMID 30078731, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA polymerase II complex binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in transcription elongation by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA polymerase-associated protein CTR9
NP_001255000.1
  • Confirmed by transcript evidence
NP_001255001.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    9491640..9497044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001268071.4 → NP_001255000.1  RNA polymerase-associated protein CTR9 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001255000.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0P268, C0P269, C0P270, Q03560
    Conserved Domains (5) summary
    COG0457
    Location:156 → 442
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:180 → 205
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:357 → 388
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:631 → 706
    TPR_11; TPR repeat
    pfam13424
    Location:473 → 554
    TPR_12; Tetratricopeptide repeat

  2. NM_001268072.4 → NP_001255001.1  RNA polymerase-associated protein CTR9 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001255001.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q03560
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q03560.3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.