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T16G12.6 Exportin-T [ Caenorhabditis elegans ]

Gene ID: 176420, updated on 2-Nov-2024

Summary

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Official Symbol
T16G12.6
Official Full Name
Exportin-T
Primary source
WormBase:WBGene00011807
Locus tag
CELE_T16G12.6
See related
AllianceGenome:WB:WBGene00011807
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable tRNA binding activity. Predicted to be involved in tRNA re-export from nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm and nuclear matrix. Orthologous to human IPO13 (importin 13). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See T16G12.6 in Genome Data Viewer
Location:
chromosome: III
Exon count:
14
Sequence:
Chromosome: III; NC_003281.10 (10069578..10076041)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Serpentine receptor class gamma Neighboring gene Uncharacterized protein Neighboring gene RTP1_C1 domain-containing protein Neighboring gene Regulatory protein zeste Neighboring gene Uncharacterized protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
  
enables tRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in macromolecule localization IEA
Inferred from Electronic Annotation
more info
  
involved_in nitrogen compound transport IEA
Inferred from Electronic Annotation
more info
  
involved_in nucleocytoplasmic transport IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA re-export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA re-export from nucleus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in nuclear matrix IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Exportin-T
NP_001366683.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    10069578..10076041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001379878.3 → NP_001366683.1  Exportin-T [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22529
    Conserved Domains (2) summary
    pfam08389
    Location:111 → 214
    Xpo1; Exportin 1-like protein
    pfam18773
    Location:393 → 414
    Importin_rep; Importin 13 repeat
Nucleotide Protein
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