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ptr-25 SSD domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176469, updated on 2-Nov-2024

Summary

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Official Symbol
ptr-25
Official Full Name
SSD domain-containing protein
Primary source
WormBase:WBGene00009653
Locus tag
CELE_F43D9.1
See related
AllianceGenome:WB:WBGene00009653
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in endocytosis and molting cycle. Located in centrosome. Is expressed in head neurons; interneuron; and muscle cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ptr-25 in Genome Data Viewer
Location:
chromosome: III
Exon count:
19
Sequence:
Chromosome: III; NC_003281.10 (10488124..10500239)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene BTB domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ras-related protein Rab-33 Neighboring gene TAFII28-like protein domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of a novel gene expressed in neuromuscular tissues and centrosomes in Caenorhabditis elegans. Kwon S, et al. Cell Biochem Funct, 2001 Jun. PMID 11335932
  2. Ptchd1 mediates opioid tolerance via cholesterol-dependent effects on μ-opioid receptor trafficking. Maza N, et al. Nat Neurosci, 2022 Sep. PMID 35982154, Free PMC Article
  3. The C. elegans regulatory factor X (RFX) DAF-19M module: A shift from general ciliogenesis to cell-specific ciliary and behavioral specialization. Ahn S, et al. Cell Rep, 2022 Apr 12. PMID 35417689
  4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in molting cycle, collagen and cuticulin-based cuticle IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in centrosome IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytoplasmic vesicle membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SSD domain-containing protein
NP_499313.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    10488124..10500239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066912.7 → NP_499313.2  SSD domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499313.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ECF2
    Conserved Domains (1) summary
    cl25655
    Location:328 → 1021
    Patched; Patched family
Nucleotide Protein
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