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fipr-17 FIP (Fungus-Induced Protein) Related [ Caenorhabditis elegans ]

Gene ID: 176530, updated on 2-Nov-2024

Summary

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Official Symbol
fipr-17
Official Full Name
FIP (Fungus-Induced Protein) Related
Primary source
WormBase:WBGene00012965
Locus tag
CELE_Y48A6B.4
See related
AllianceGenome:WB:WBGene00012965
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in vas deferens. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See fipr-17 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003281.10 (11007459..11007602, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Putative H/ACA ribonucleoprotein complex subunit 2-like protein Neighboring gene Exosome complex component CSL4 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

General protein information

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Preferred Names
FIP (Fungus-Induced Protein) Related
NP_499414.1
  • Product from WormBase gene class fipr;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    11007459..11007602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067013.7 → NP_499414.1  FIP (Fungus-Induced Protein) Related [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499414.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XXD3
    Conserved Domains (1) summary
    pfam10917
    Location:1 → 19
    DUF2708; Protein of unknown function (DUF2708)
Nucleotide Protein
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