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W09D6.1 AMP-dependent synthetase/ligase domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176537, updated on 2-Nov-2024

Summary

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Official Symbol
W09D6.1
Official Full Name
AMP-dependent synthetase/ligase domain-containing protein
Primary source
WormBase:WBGene00012356
Locus tag
CELE_W09D6.1
See related
AllianceGenome:WB:WBGene00012356
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in amino acid activation for nonribosomal peptide biosynthetic process. Orthologous to human AASDH (aminoadipate-semialdehyde dehydrogenase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See W09D6.1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
12
Sequence:
Chromosome: III; NC_003281.10 (11068853..11072993)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Regulator of spindle assembly protein 2 Neighboring gene ncRNA Neighboring gene tRNA-Pro Neighboring gene tRNA-Pro Neighboring gene Seven TM Receptor Neighboring gene Seven TM Receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in amino acid activation for nonribosomal peptide biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
AMP-dependent synthetase/ligase domain-containing protein
NP_001255106.1
  • Confirmed by transcript evidence
NP_001370037.1
  • Partially confirmed by transcript evidence
NP_871636.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    11068853..11072993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001268177.2 → NP_001255106.1  AMP-dependent synthetase/ligase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001255106.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B6VQ94
    Conserved Domains (3) summary
    cd17654
    Location:4 → 430
    A_NRPS_acs4; acyl-CoA synthetase family member 4
    pfam00550
    Location:443 → 505
    PP-binding; Phosphopantetheine attachment site
    pfam13360
    Location:535 → 742
    PQQ_2; PQQ-like domain

  2. NM_001382995.1 → NP_001370037.1  AMP-dependent synthetase/ligase domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XUJ4
    Conserved Domains (3) summary
    cd17654
    Location:4 → 430
    A_NRPS_acs4; acyl-CoA synthetase family member 4
    pfam00550
    Location:443 → 505
    PP-binding; Phosphopantetheine attachment site
    pfam13360
    Location:535 → 682
    PQQ_2; PQQ-like domain

  3. NM_181907.4 → NP_871636.1  AMP-dependent synthetase/ligase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_871636.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8I104
    Conserved Domains (3) summary
    cd17654
    Location:4 → 430
    A_NRPS_acs4; acyl-CoA synthetase family member 4
    pfam00550
    Location:443 → 505
    PP-binding; Phosphopantetheine attachment site
    pfam13360
    Location:535 → 682
    PQQ_2; PQQ-like domain
Nucleotide Protein
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