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ceh-91 Homeobox domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176594, updated on 2-Nov-2024

Summary

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Official Symbol
ceh-91
Official Full Name
Homeobox domain-containing protein
Primary source
WormBase:WBGene00013425
Locus tag
CELE_Y66A7A.5
See related
AllianceGenome:WB:WBGene00013425
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity and chromatin binding activity. Predicted to be involved in negative regulation of gene expression, epigenetic. Predicted to be active in nucleus. Is expressed in head muscle; intestine; nervous system; and rectal gland cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ceh-91 in Genome Data Viewer
Location:
chromosome: III
Exon count:
8
Sequence:
Chromosome: III; NC_003281.10 (11616746..11623994)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Transposase Neighboring gene Neuropeptide-Like Protein Neighboring gene Aminotran_5 domain-containing protein Neighboring gene putative N-acetylgalactosaminyltransferase 8 Neighboring gene IMV envelope protein Neighboring gene Putative T-box protein 33

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unique homeobox codes delineate all the neuron classes of C. elegans. Reilly MB, et al. Nature, 2020 Aug. PMID 32814896, Free PMC Article
  2. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in negative regulation of gene expression, epigenetic IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Homeobox domain-containing protein
NP_499503.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    11616746..11623994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067102.5 → NP_499503.2  Homeobox domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499503.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7K6J1
    Conserved Domains (1) summary
    cd00086
    Location:525 → 582
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein
Heading Accession and Version

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