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znf-593 Zinc finger protein 593 homolog [ Caenorhabditis elegans ]

Gene ID: 176624, updated on 2-Nov-2024

Summary

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Official Symbol
znf-593
Official Full Name
Zinc finger protein 593 homolog
Primary source
WormBase:WBGene00013236
Locus tag
CELE_Y56A3A.18
See related
AllianceGenome:WB:WBGene00013236
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in ribosome biogenesis. Predicted to be located in cytoplasm and nucleus. Is expressed in head and intestine. Orthologous to human ZNF593 (zinc finger protein 593). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See znf-593 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003281.10 (11917836..11918719, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Rubicon Homology domain-containing protein Neighboring gene Acyl carrier protein Neighboring gene Nuclear pore complex protein npp-16 Neighboring gene CCR4-NOT transcription complex subunit 7 Neighboring gene Translocon-associated protein subunit delta

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Alterations in ribosome biogenesis cause specific defects in C. elegans hermaphrodite gonadogenesis. Voutev R, et al. Dev Biol, 2006 Oct 1. PMID 16876152
  2. Identification of conserved pathways of DNA-damage response and radiation protection by genome-wide RNAi. van Haaften G, et al. Curr Biol, 2006 Jul 11. PMID 16824923
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Zinc finger protein 593 homolog
NP_499552.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    11917836..11918719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067151.7 → NP_499552.1  Zinc finger protein 593 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499552.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9U239
    Conserved Domains (1) summary
    COG5112
    Location:6 → 99
    UFD2; U1-like Zn-finger-containing protein [General function prediction only]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9U239.1

Gene LinkOut

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