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Y56A3A.22 DUF1279 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176627, updated on 2-Nov-2024

Summary

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Official Symbol
Y56A3A.22
Official Full Name
DUF1279 domain-containing protein
Primary source
WormBase:WBGene00013239
Locus tag
CELE_Y56A3A.22
See related
AllianceGenome:WB:WBGene00013239
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Predicted to be active in mitochondrion. Is expressed in germ line; gonad; hypodermis; intestine; and muscle cell. Orthologous to human FAM210A (family with sequence similarity 210 member A). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y56A3A.22 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003281.10 (11921692..11923825)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 7 Neighboring gene Translocon-associated protein subunit delta Neighboring gene Nitrilase homolog Neighboring gene dolichol kinase Neighboring gene Homeobox protein cut-like Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Caenorhabditis elegans homologue of Fam210 is required for oogenesis and reproduction. Kang J, et al. J Genet Genomics, 2020 Nov 20. PMID 33547005
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Caenorhabditis elegans homologue of Fam210 is required for oogenesis and reproduction.
    Title: Caenorhabditis elegans homologue of Fam210 is required for oogenesis and reproduction.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DUF1279 domain-containing protein
NP_499555.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    11921692..11923825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067154.9 → NP_499555.1  DUF1279 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499555.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U236, Q9U237
    Conserved Domains (1) summary
    pfam06916
    Location:82 → 170
    DUF1279; Protein of unknown function (DUF1279)
Nucleotide Protein
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