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pph-4.1 Serine/threonine-protein phosphatase 4 catalytic subunit 1 [ Caenorhabditis elegans ]

Gene ID: 176657, updated on 2-Nov-2024

Summary

Official Symbol
pph-4.1
Official Full Name
Serine/threonine-protein phosphatase 4 catalytic subunit 1
Primary source
WormBase:WBGene00004085
Locus tag
CELE_Y75B8A.30
See related
AllianceGenome:WB:WBGene00004085
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable protein serine/threonine phosphatase activity. Involved in chiasma assembly; embryo development; and regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination. Located in centrosome and cytoplasm. Orthologous to human PPP4C (protein phosphatase 4 catalytic subunit). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See pph-4.1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (12345323..12351336, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene BZIP domain-containing protein Neighboring gene ncRNA Neighboring gene BZIP domain-containing protein Neighboring gene FAM172 family protein homolog Y75B8A.31 Neighboring gene BZIP domain-containing protein Neighboring gene Serpentine receptor class gamma

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein serine/threonine phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein serine/threonine phosphatase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
involved_in cell division IEA
Inferred from Electronic Annotation
more info
 
involved_in chiasma assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in dephosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
involved_in double-strand break repair via homologous recombination IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in embryo development ending in birth or egg hatching IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 
involved_in meiotic cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in centrosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
Serine/threonine-protein phosphatase 4 catalytic subunit 1
NP_499603.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    12345323..12351336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067202.6NP_499603.1  Serine/threonine-protein phosphatase 4 catalytic subunit 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499603.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q966Q4, Q9XW79
    Conserved Domains (2) summary
    PTZ00239
    Location:31333
    PTZ00239; serine/threonine protein phosphatase 2A; Provisional
    cd07415
    Location:31316
    MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain