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Y75B8A.31 FAM172 family protein homolog Y75B8A.31 [ Caenorhabditis elegans ]

Gene ID: 176658, updated on 2-Nov-2024

Summary

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Official Symbol
Y75B8A.31
Official Full Name
FAM172 family protein homolog Y75B8A.31
Primary source
WormBase:WBGene00013561
Locus tag
CELE_Y75B8A.31
See related
AllianceGenome:WB:WBGene00013561
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to contribute to siRNA binding activity. Predicted to be involved in regulatory ncRNA-mediated heterochromatin formation. Predicted to be active in nucleus. Orthologous to several human genes including ARB2A (ARB2 cotranscriptional regulator A). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y75B8A.31 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (12351642..12354914)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene BZIP domain-containing protein Neighboring gene Serine/threonine-protein phosphatase 4 catalytic subunit 1 Neighboring gene BZIP domain-containing protein Neighboring gene Serpentine receptor class gamma Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
contributes_to siRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulatory ncRNA-mediated heterochromatin formation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
FAM172 family protein homolog Y75B8A.31
NP_499604.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    12351642..12354914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067203.7 → NP_499604.1  FAM172 family protein homolog Y75B8A.31 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499604.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XW78
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XW78.1

Gene LinkOut

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