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pqn-83 CX domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176729, updated on 2-Nov-2024

Summary

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Official Symbol
pqn-83
Official Full Name
CX domain-containing protein
Primary source
WormBase:WBGene00004164
Locus tag
CELE_Y39E4B.3
See related
AllianceGenome:WB:WBGene00004164
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pqn-83 in Genome Data Viewer
Location:
chromosome: III
Exon count:
7
Sequence:
Chromosome: III; NC_003281.10 (13087475..13099461, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene IK cytokine;Smad nuclear-interacting protein 1 Neighboring gene Uncharacterized protein Neighboring gene Palmitoyltransferase Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CX domain-containing protein
NP_001367104.1
  • Confirmed by transcript evidence
NP_001379252.1
  • Confirmed by transcript evidence
NP_001379425.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    13087475..13099461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001392224.1 → NP_001379425.1  CX domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q69YZ1
    Conserved Domains (1) summary
    pfam01705
    Location:235 → 266
    CX; CX module

  2. NM_001392223.1 → NP_001379252.1  CX domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U2K1
    Conserved Domains (1) summary
    pfam01705
    Location:235 → 266
    CX; CX module

  3. NM_001379973.1 → NP_001367104.1  CX domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q69YZ0
    Conserved Domains (1) summary
    pfam01705
    Location:235 → 266
    CX; CX module
Nucleotide Protein
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