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Y38C1AB.1 N-acetylgalactosaminide beta-1,3-galactosyltransferase [ Caenorhabditis elegans ]

Gene ID: 176823, updated on 2-Nov-2024

Summary

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Official Symbol
Y38C1AB.1
Official Full Name
N-acetylgalactosaminide beta-1,3-galactosyltransferase
Primary source
WormBase:WBGene00021403
Locus tag
CELE_Y38C1AB.1
See related
AllianceGenome:WB:WBGene00021403
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be located in membrane. Orthologous to human C1GALT1C1L (C1GALT1 specific chaperone 1 like). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y38C1AB.1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (36809..39114)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Protein containing ALS2cr12 (ALS2CR12) signature Neighboring gene Ion transport domain-containing protein Neighboring gene FERM domain (Protein4.1-ezrin-radixin-moesin) family;Protein kinase domain-containing protein Neighboring gene ncRNA Neighboring gene DUF3899 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
N-acetylgalactosaminide beta-1,3-galactosyltransferase
NP_499857.3
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    36809..39114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067456.3 → NP_499857.3  N-acetylgalactosaminide beta-1,3-galactosyltransferase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499857.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ECT3
    Conserved Domains (1) summary
    cl21608
    Location:33 → 129
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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Gene LinkOut

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