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ssna-1 Sjogren's Syndrome Nuclear Autoantigen [ Caenorhabditis elegans ]

Gene ID: 176861, updated on 28-Oct-2024

Summary

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Official Symbol
ssna-1
Official Full Name
Sjogren's Syndrome Nuclear Autoantigen
Primary source
WormBase:WBGene00020300
Locus tag
CELE_T07A9.13
See related
AllianceGenome:WB:WBGene00020300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See ssna-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (388084..388716)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Small ribosomal subunit protein eS24 Neighboring gene Small ribosomal subunit protein eS24 Neighboring gene Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial Neighboring gene Syntaxin-binding protein 1 Neighboring gene Cytochrome c oxidase assembly protein COX14 Neighboring gene Nucleolar GTP-binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
Sjogren's Syndrome Nuclear Autoantigen
NP_001023361.2
  • Confirmed by transcript evidence;
    Product from WormBase gene class ssna
NP_001023362.1
  • Confirmed by transcript evidence;
    Product from WormBase gene class ssna

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    388084..388716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001028191.9 → NP_001023362.1  Sjogren's Syndrome Nuclear Autoantigen [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023362.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5F4U5
    Conserved Domains (1) summary
    TIGR02168
    Location:9 → 91
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. NM_001028190.4 → NP_001023361.2  Sjogren's Syndrome Nuclear Autoantigen [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023361.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95X71
Nucleotide Protein
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