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F53H1.4 PHD-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176944, updated on 2-Nov-2024

Summary

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Official Symbol
F53H1.4
Official Full Name
PHD-type domain-containing protein
Primary source
WormBase:WBGene00018778
Locus tag
CELE_F53H1.4
See related
AllianceGenome:WB:WBGene00018778
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in snRNA 3'-end processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Is expressed in gonad. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F53H1.4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
15
Sequence:
Chromosome: IV; NC_003282.8 (1310166..1328243)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Calponin-homology (CH) domain-containing protein Neighboring gene ATP-dependent RNA helicase;Pre-mRNA-processing ATP-dependent RNA helicase PRP5;RNA helicase Neighboring gene UDENN domain-containing protein Neighboring gene pseudo Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
  2. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
  3. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of integrator complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PHD-type domain-containing protein
NP_001023217.2
  • Confirmed by transcript evidence
NP_001379979.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    1310166..1328243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001028046.7 → NP_001023217.2  PHD-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023217.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O45075
    Conserved Domains (2) summary
    smart00249
    Location:1044 → 1094
    PHD; PHD zinc finger
    pfam15613
    Location:748 → 853
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

  2. NM_001392255.1 → NP_001379979.1  PHD-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q86MG4
    Conserved Domains (1) summary
    smart00249
    Location:1008 → 1058
    PHD; PHD zinc finger
Nucleotide Protein
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