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idpp-12 Intrinsically Disordered Protein, expressed in Pharynx [ Caenorhabditis elegans ]

Gene ID: 177098, updated on 2-Nov-2024

Summary

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Official Symbol
idpp-12
Official Full Name
Intrinsically Disordered Protein, expressed in Pharynx
Primary source
WormBase:WBGene00021084
Locus tag
CELE_W08E12.3
See related
AllianceGenome:WB:WBGene00021084
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in pharynx. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See idpp-12 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
2
Sequence:
Chromosome: IV; NC_003282.8 (3303990..3304569)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene CC domain-containing protein Neighboring gene CC domain-containing protein Neighboring gene Chorion class high-cysteine HCB protein 12-like Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular genetic and biochemical characterization of a putative family of zinc metalloproteins in Caenorhabditis elegans. Chaudhuri P, et al. Metallomics, 2018 Dec 12. PMID 30444224, Free PMC Article
  2. A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins. Kamal M, et al. Elife, 2022 Oct 19. PMID 36259463, Free PMC Article
  3. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
Intrinsically Disordered Protein, expressed in Pharynx
NP_500315.1
  • Confirmed by transcript evidence;
    Product from WormBase gene class idpp

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    3303990..3304569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067914.5 → NP_500315.1  Intrinsically Disordered Protein, expressed in Pharynx [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500315.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N5B1
Nucleotide Protein
Heading Accession and Version

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