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wrt-5 Warthog protein 5 [ Caenorhabditis elegans ]

Gene ID: 177162, updated on 2-Nov-2024

Summary

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Official Symbol
wrt-5
Official Full Name
Warthog protein 5
Primary source
WormBase:WBGene00006951
Locus tag
CELE_W03D2.5
See related
AllianceGenome:WB:WBGene00006951
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable signaling receptor binding activity. Predicted to be involved in cell communication. Predicted to be located in extracellular region. Is expressed in epithelial cell; excretory system; hermaphrodite gonad; and pharyngeal-intestinal valve. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See wrt-5 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (4050006..4051639, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Cell division cycle protein 73 Neighboring gene Proliferating cell nuclear antigen Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The hedgehog-related gene wrt-5 is essential for hypodermal development in Caenorhabditis elegans. Hao L, et al. Dev Biol, 2006 Feb 15. PMID 16413526
  2. Warthog and groundhog, novel families related to hedgehog. Bürglin TR. Curr Biol, 1996 Sep 1. PMID 8805384
  3. Homologs of the Hh signalling network in C. elegans. Bürglin TR, et al. WormBook, 2006 Jan 28. PMID 18050469, Free PMC Article
  4. The homeodomain protein PAL-1 specifies a lineage-specific regulatory network in the C. elegans embryo. Baugh LR, et al. Development, 2005 Apr. PMID 15772128
  5. Caenorhabditis elegans has scores of hedgehog-related genes: sequence and expression analysis. Aspöck G, et al. Genome Res, 1999 Oct. PMID 10523520

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables signaling receptor binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell communication ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
Warthog protein 5
NP_001040994.1
  • Confirmed by transcript evidence
NP_001040995.1
  • Confirmed by transcript evidence
NP_001294406.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    4050006..4051639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047529.4 → NP_001040994.1  Warthog protein 5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040994.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O02116, Q1RS88, Q9U7D3

  2. NM_001307477.3 → NP_001294406.1  Warthog protein 5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294406.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    U4PM52

  3. NM_001047530.4 → NP_001040995.1  Warthog protein 5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040995.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9U7D3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9U7D3.2

Gene LinkOut

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