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dpy-13 Cuticle collagen dpy-13 [ Caenorhabditis elegans ]

Gene ID: 177187, updated on 2-Nov-2024

Summary

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Official Symbol
dpy-13
Official Full Name
Cuticle collagen dpy-13
Primary source
WormBase:WBGene00001074
Locus tag
CELE_F30B5.1
See related
AllianceGenome:WB:WBGene00001074
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in collagen and cuticulin-based cuticle extracellular matrix. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See dpy-13 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (4235614..4236710)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class BC (Class B-like) Neighboring gene Zinc transporter ZIP3 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutant Caenorhabditis elegans RNA polymerase II with a 20,000-fold reduced sensitivity to alpha-amanitin. Rogalski TM, et al. Genetics, 1990 Dec. PMID 2076819, Free PMC Article
  2. Transformation of Caenorhabditis elegans with genes from parasitic nematodes. Grant WN. Parasitol Today, 1992 Oct. PMID 15463533
  3. RNA polymerase II from wild type and alpha-amanitin-resistant strains of Caenorhabditis elegans. Sanford T, et al. J Biol Chem, 1983 Nov 10. PMID 6630208
  4. Targeted gene deletions in C. elegans using transposon excision. Frøkjaer-Jensen C, et al. Nat Methods, 2010 Jun. PMID 20418868, Free PMC Article
  5. Cuticle collagen genes of Haemonchus contortus and Caenorhabditis elegans are highly conserved. Shamansky LM, et al. Mol Biochem Parasitol, 1989 Nov. PMID 2615789

See all (72) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cuticle development involved in collagen and cuticulin-based cuticle molting cycle IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen and cuticulin-based cuticle extracellular matrix IDA
Inferred from Direct Assay
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cuticle collagen dpy-13
NP_500519.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    4235614..4236710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068118.6 → NP_500519.1  Cuticle collagen dpy-13 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500519.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P17657
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P17657.2

Gene LinkOut

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