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pygo-1 BZIP domain-containing protein;SH3 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177280, updated on 2-Nov-2024

Summary

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Official Symbol
pygo-1
Official Full Name
BZIP domain-containing protein;SH3 domain-containing protein
Primary source
WormBase:WBGene00015330
Locus tag
CELE_C02B10.5
See related
AllianceGenome:WB:WBGene00015330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in Wnt signaling pathway. Predicted to be located in nucleus. Orthologous to human PYGO1 (pygopus family PHD finger 1) and PYGO2 (pygopus family PHD finger 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pygo-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
7
Sequence:
Chromosome: IV; NC_003282.8 (5083303..5086887)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Isovaleryl-CoA dehydrogenase, mitochondrial Neighboring gene SNAPIN protein homolog Neighboring gene RRM domain-containing protein Neighboring gene EGF-like domain-containing protein C02B10.3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dose-dependent functions of SWI/SNF BAF in permitting and inhibiting cell proliferation in vivo. van der Vaart A, et al. Sci Adv, 2020 May. PMID 32494730, Free PMC Article
  2. The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo. Du Z, et al. Dev Cell, 2015 Sep 14. PMID 26321128, Free PMC Article
  3. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
  4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BZIP domain-containing protein;SH3 domain-containing protein
NP_001368386.1
  • Confirmed by transcript evidence
NP_500719.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    5083303..5086887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068318.9 → NP_500719.1  SH3 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500719.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44447

  2. NM_001380212.1 → NP_001368386.1  BZIP domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    V6CLE9
Nucleotide Protein
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