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tebp-2 SPK domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177337, updated on 2-Nov-2024

Summary

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Official Symbol
tebp-2
Official Full Name
SPK domain-containing protein
Primary source
WormBase:WBGene00020464
Locus tag
CELE_T12E12.3
See related
AllianceGenome:WB:WBGene00020464
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tebp-2 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
6
Sequence:
Chromosome: IV; NC_003282.8 (5541627..5544748)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Sex-determining protein fem-1 Neighboring gene Dynamin-1-like protein drp-1 Neighboring gene Chromo domain-containing protein Neighboring gene putative E3 ubiquitin-protein ligase ariadne-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Caenorhabditis elegans telomere-binding proteins TEBP-1 and TEBP-2 adapt the Myb module to dimerize and bind telomeric DNA. Padmanaban S, et al. Proc Natl Acad Sci U S A, 2024 Apr 16. PMID 38588418, Free PMC Article
  2. POT-3 preferentially binds the terminal DNA-repeat on the telomeric G-overhang. Yu X, et al. Nucleic Acids Res, 2023 Jan 25. PMID 36583365, Free PMC Article
  3. The double-stranded DNA-binding proteins TEBP-1 and TEBP-2 form a telomeric complex with POT-1. Dietz S, et al. Nat Commun, 2021 May 11. PMID 33976151, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The double-stranded DNA-binding proteins TEBP-1 and TEBP-2 form a telomeric complex with POT-1.
    Title: The double-stranded DNA-binding proteins TEBP-1 and TEBP-2 form a telomeric complex with POT-1.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SPK domain-containing protein
NP_500827.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    5541627..5544748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068426.5 → NP_500827.1  SPK domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500827.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22429
Nucleotide Protein
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Gene LinkOut

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