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F42C5.6 Transmembrane protein [ Caenorhabditis elegans ]

Gene ID: 177502, updated on 2-Nov-2024

Summary

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Official Symbol
F42C5.6
Official Full Name
Transmembrane protein
Primary source
WormBase:WBGene00018348
Locus tag
CELE_F42C5.6
See related
AllianceGenome:WB:WBGene00018348
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F42C5.6 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (7308445..7309074, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RING-type domain-containing protein Neighboring gene Protein-tyrosine phosphatase catalytic domain-containing protein;Tyrosine-protein phosphatase domain-containing protein Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Ground-like domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transmembrane protein
NP_501165.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    7308445..7309074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068764.4 → NP_501165.3  Transmembrane protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501165.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20326
    Conserved Domains (1) summary
    pfam10853
    Location:68 → 104
    DUF2650; Protein of unknown function (DUF2650)
Nucleotide Protein
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