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daf-42 Mucin-5AC;Prion-like-(Q/N-rich)-domain-bearing protein;Proline-rich protein 36-like [ Caenorhabditis elegans ]

Gene ID: 177507, updated on 2-Nov-2024

Summary

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Official Symbol
daf-42
Official Full Name
Mucin-5AC;Prion-like-(Q/N-rich)-domain-bearing protein;Proline-rich protein 36-like
Primary source
WormBase:WBGene00021496
Locus tag
CELE_Y40C5A.3
See related
AllianceGenome:WB:WBGene00021496
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in cuticle and hypodermis. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See daf-42 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
24
Sequence:
Chromosome: IV; NC_003282.8 (7333638..7346851, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ion transport domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Trp Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. daf-42 is an evolutionarily young gene essential for dauer development in Caenorhabditis elegans. Lim DS, et al. Genetics, 2023 Aug 9. PMID 37216205
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
Mucin-5AC;Prion-like-(Q/N-rich)-domain-bearing protein;Proline-rich protein 36-like
NP_001255292.2
  • Partially confirmed by transcript evidence
NP_001255293.2
  • Partially confirmed by transcript evidence
NP_001294177.1
  • Confirmed by transcript evidence
NP_001294178.1
  • Confirmed by transcript evidence
NP_001294179.1
  • Partially confirmed by transcript evidence
NP_001294180.1
  • Partially confirmed by transcript evidence
NP_001294181.1
  • Partially confirmed by transcript evidence
NP_001294182.1
  • Partially confirmed by transcript evidence
NP_001294183.1
  • Partially confirmed by transcript evidence
NP_001294184.1
  • Partially confirmed by transcript evidence
NP_001294185.1
  • Partially confirmed by transcript evidence
NP_001294186.1
  • Partially confirmed by transcript evidence
NP_001294187.1
  • Partially confirmed by transcript evidence
NP_001294188.1
  • Partially confirmed by transcript evidence
NP_001294189.1
  • Partially confirmed by transcript evidence
NP_001294190.1
  • Partially confirmed by transcript evidence
NP_001294191.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    7333638..7346851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001307249.1 → NP_001294178.1  Prion-like-(Q/N-rich)-domain-bearing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294178.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6SBF1
    Conserved Domains (1) summary
    PHA03247
    Location:204 → 678
    PHA03247; large tegument protein UL36; Provisional

  2. NM_001307248.1 → NP_001294177.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294177.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RTK4
    Conserved Domains (1) summary
    PHA03247
    Location:397 → 880
    PHA03247; large tegument protein UL36; Provisional

  3. NM_001307250.1 → NP_001294179.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294179.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RR12
    Conserved Domains (1) summary
    PHA03247
    Location:413 → 971
    PHA03247; large tegument protein UL36; Provisional

  4. NM_001268363.2 → NP_001255292.2  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001255292.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L029
    Conserved Domains (2) summary
    PRK13335
    Location:1317 → 1468
    PRK13335; superantigen-like protein; Reviewed
    PHA03247
    Location:413 → 963
    PHA03247; large tegument protein UL36; Provisional

  5. NM_001307255.1 → NP_001294184.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294184.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RR15
    Conserved Domains (3) summary
    PRK13335
    Location:1317 → 1468
    PRK13335; superantigen-like protein; Reviewed
    PHA03247
    Location:413 → 963
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1731 → 2066
    PRK10263; DNA translocase FtsK; Provisional

  6. NM_001307252.1 → NP_001294181.1  Proline-rich protein 36-like [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294181.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RRZ4
    Conserved Domains (2) summary
    PHA03247
    Location:235 → 785
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1553 → 1888
    PRK10263; DNA translocase FtsK; Provisional

  7. NM_001307254.1 → NP_001294183.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294183.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6SBG0
    Conserved Domains (1) summary
    PRK10263
    Location:477 → 812
    PRK10263; DNA translocase FtsK; Provisional

  8. NM_001307259.1 → NP_001294188.1  Prion-like-(Q/N-rich)-domain-bearing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294188.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6SBH5
    Conserved Domains (2) summary
    PHA03308
    Location:377 → 497
    PHA03308; transcriptional regulator ICP4; Provisional
    PRK12323
    Location:446 → 651
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional

  9. NM_001307262.1 → NP_001294191.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294191.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RS00
    Conserved Domains (1) summary
    PHA03247
    Location:444 → 952
    PHA03247; large tegument protein UL36; Provisional

  10. NM_001307256.1 → NP_001294185.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294185.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RY65
    Conserved Domains (2) summary
    PHA03247
    Location:460 → 1005
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:854 → 1176
    PRK10263; DNA translocase FtsK; Provisional

  11. NM_001307251.1 → NP_001294180.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294180.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RY60
    Conserved Domains (1) summary
    PHA03247
    Location:460 → 1018
    PHA03247; large tegument protein UL36; Provisional

  12. NM_001307253.1 → NP_001294182.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294182.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RTK8
    Conserved Domains (2) summary
    PHA03247
    Location:460 → 1018
    PHA03247; large tegument protein UL36; Provisional
    TIGR00600
    Location:995 → 1199
    rad2; DNA excision repair protein (rad2)

  13. NM_001307260.1 → NP_001294189.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294189.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RR18
    Conserved Domains (1) summary
    PHA03247
    Location:460 → 1018
    PHA03247; large tegument protein UL36; Provisional

  14. NM_001307261.1 → NP_001294190.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294190.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RY69
    Conserved Domains (1) summary
    PHA03247
    Location:460 → 1018
    PHA03247; large tegument protein UL36; Provisional

  15. NM_001307257.1 → NP_001294186.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294186.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RRZ7
    Conserved Domains (2) summary
    PHA03247
    Location:460 → 1018
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:854 → 1189
    PRK10263; DNA translocase FtsK; Provisional

  16. NM_001268364.2 → NP_001255293.2  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001255293.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    D0G914
    Conserved Domains (2) summary
    PRK13335
    Location:1364 → 1521
    PRK13335; superantigen-like protein; Reviewed
    PHA03247
    Location:460 → 1010
    PHA03247; large tegument protein UL36; Provisional

  17. NM_001307258.1 → NP_001294187.1  Mucin-5AC [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294187.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RTL3
    Conserved Domains (3) summary
    PRK13335
    Location:1364 → 1515
    PRK13335; superantigen-like protein; Reviewed
    PHA03247
    Location:460 → 1010
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1778 → 2113
    PRK10263; DNA translocase FtsK; Provisional
Nucleotide Protein
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