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clec-180 C-type lectin domain-containing protein 180 [ Caenorhabditis elegans ]

Gene ID: 177534, updated on 2-Nov-2024

Summary

Official Symbol
clec-180
Official Full Name
C-type lectin domain-containing protein 180
Primary source
WormBase:WBGene00017991
Locus tag
CELE_F32E10.3
See related
AllianceGenome:WB:WBGene00017991
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable carbohydrate binding activity. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See clec-180 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
10
Sequence:
Chromosome: IV; NC_003282.8 (7568893..7573766)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene TPR_REGION domain-containing protein Neighboring gene Low-density lipoprotein receptor domain class A Neighboring gene ncRNA Neighboring gene Tudor domain-containing protein Neighboring gene Chromo domain-containing protein cec-4

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
C-type lectin domain-containing protein 180
NP_001294174.1
  • Confirmed by transcript evidence
NP_001368446.1
  • Confirmed by transcript evidence
NP_001368447.1
  • Confirmed by transcript evidence
NP_501229.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    7568893..7573766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001307245.3NP_001294174.1  C-type lectin domain-containing protein 180 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294174.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q19970, W6RRY7, W6RTK1, W6SBE9
    Conserved Domains (1) summary
    smart00034
    Location:59184
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
  2. NM_068828.4NP_501229.2  C-type lectin domain-containing protein 180 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501229.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q19970
    Conserved Domains (1) summary
    smart00034
    Location:59184
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
  3. NM_001380335.1NP_001368446.1  C-type lectin domain-containing protein 180 [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    pfam05109
    Location:288397
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
  4. NM_001380336.1NP_001368447.1  C-type lectin domain-containing protein 180 [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    pfam05109
    Location:268377
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)