rps-2 Small ribosomal subunit protein uS5 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: rps-2
Official Full Name: Small ribosomal subunit protein uS5
Primary source: WormBase:WBGene00004471
Locus tag: CELE_C49H3.11
See related: AllianceGenome:WB:WBGene00004471
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS2 (ribosomal protein S2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rps-2 in Genome Data Viewer

Location:: chromosome: IV

Exon count:: 3

Sequence:: Chromosome: IV; NC_003282.8 (7925298..7926391, complement)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

A ZTF-7/RPS-2 complex mediates the cold-warm response in C. elegans.
Title: A ZTF-7/RPS-2 complex mediates the cold-warm response in C. elegans.

Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

C49H3.11 (e-PCR)
- UniSTS:306977

C49H3.12 (e-PCR)
- UniSTS:320896

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables structural constituent of ribosome	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in translation	IBA Inferred from Biological aspect of Ancestor more info
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of cytosolic small ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info
part_of small ribosomal subunit	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Small ribosomal subunit protein uS5

NP_501322.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

7925298..7926391 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_068921.6 → NP_501322.1 Small ribosomal subunit protein uS5 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_501322.1

Status: REVIEWED

UniProtKB/Swiss-Prot

P51403

Conserved Domains (3) summary

TIGR01020
Location:56 → 257

uS5_euk_arch; ribosomal protein uS5, eukaryotic/archaeal form

pfam00333
Location:98 → 162

Ribosomal_S5; Ribosomal protein S5, N-terminal domain

pfam03719
Location:181 → 248

Ribosomal_S5_C; Ribosomal protein S5, C-terminal domain