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Y42H9AR.1 PDZ GRASP-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177604, updated on 2-Nov-2024

Summary

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Official Symbol
Y42H9AR.1
Official Full Name
PDZ GRASP-type domain-containing protein
Primary source
WormBase:WBGene00021536
Locus tag
CELE_Y42H9AR.1
See related
AllianceGenome:WB:WBGene00021536
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in Golgi organization. Predicted to be active in Golgi apparatus. Orthologous to several human genes including GORASP2 (golgi reassembly stacking protein 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y42H9AR.1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
6
Sequence:
Chromosome: IV; NC_003282.8 (8113495..8115673)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene FMRF-Like Peptide Neighboring gene FYVE-type domain-containing protein Neighboring gene ELM2 domain-containing protein Neighboring gene Receptor L-domain domain-containing protein Neighboring gene Serine/threonine-protein phosphatase Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
  2. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
  3. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  4. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PDZ GRASP-type domain-containing protein
NP_001370725.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    8113495..8115673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001383134.2 → NP_001370725.1  PDZ GRASP-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N3Y1
    Conserved Domains (3) summary
    PHA03247
    Location:201 → 506
    PHA03247; large tegument protein UL36; Provisional
    pfam04495
    Location:70 → 204
    GRASP55_65; GRASP55/65 PDZ-like domain
    cl00117
    Location:14 → 100
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
Nucleotide Protein
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