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M116.5 Calponin homology domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177642, updated on 18-Sep-2024

Summary

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Official Symbol
M116.5
Official Full Name
Calponin homology domain-containing protein
Primary source
WormBase:WBGene00019792
Locus tag
CELE_M116.5
See related
AllianceGenome:WB:WBGene00019792
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable actin binding activity and microtubule binding activity. Predicted to be located in cell projection. Orthologous to human CLMN (calmin). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See M116.5 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
17
Sequence:
Chromosome: IV; NC_003282.8 (8414265..8421061, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene F-box domain-containing protein Neighboring gene F-box domain-containing protein Neighboring gene pseudo Neighboring gene Transthyretin-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
  
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
part_of filamentous actin IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in microtubule organizing center IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Calponin homology domain-containing protein
NP_501432.4
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    8414265..8421061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069031.7 → NP_501432.4  Calponin homology domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501432.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q965L0
    Conserved Domains (3) summary
    smart00243
    Location:796 → 868
    GAS2; Growth-Arrest-Specific Protein 2 Domain
    cd21188
    Location:38 → 142
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cl00030
    Location:179 → 285
    CH_SF; calponin homology (CH) domain superfamily
Nucleotide Protein
Heading Accession and Version

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