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F20C5.6 ELKS/RAB6-interacting/CAST family member 2 [ Caenorhabditis elegans ]

Gene ID: 177687, updated on 18-Sep-2024

Summary

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Official Symbol
F20C5.6
Official Full Name
ELKS/RAB6-interacting/CAST family member 2
Primary source
WormBase:WBGene00008971
Locus tag
CELE_F20C5.6
See related
AllianceGenome:WB:WBGene00008971
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See F20C5.6 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (8771560..8773206, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene PACT_coil_coil domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Protein CASP Neighboring gene pseudo Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
ELKS/RAB6-interacting/CAST family member 2
NP_501513.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    8771560..8773206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069112.7 → NP_501513.2  ELKS/RAB6-interacting/CAST family member 2 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EFF2
    Conserved Domains (1) summary
    TIGR02168
    Location:33 → 312
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
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