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col-118 Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177699, updated on 2-Nov-2024

Summary

Official Symbol
col-118
Official Full Name
Nematode cuticle collagen N-terminal domain-containing protein
Primary source
WormBase:WBGene00000692
Locus tag
CELE_T11B7.3
See related
AllianceGenome:WB:WBGene00000692
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See col-118 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (8848218..8849673)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L17;Ribosomal_L30_N domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene LIM zinc-binding domain-containing protein;PDZ and LIM domain protein Zasp Neighboring gene Secreted protein

General protein information

Preferred Names
Nematode cuticle collagen N-terminal domain-containing protein
NP_001122798.1
  • Confirmed by transcript evidence
NP_001122799.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    8848218..8849673
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129326.3NP_001122798.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122798.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5JYR8
    Conserved Domains (2) summary
    pfam01391
    Location:187259
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:456
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
  2. NM_001129327.4NP_001122799.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122799.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5JYR9
    Conserved Domains (2) summary
    pfam01391
    Location:154205
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:456
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain