U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nhr-34 Nuclear hormone receptor family member nhr-34 [ Caenorhabditis elegans ]

Gene ID: 177800, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
nhr-34
Official Full Name
Nuclear hormone receptor family member nhr-34
Primary source
WormBase:WBGene00003627
Locus tag
CELE_F58G6.5
See related
AllianceGenome:WB:WBGene00003627
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nhr-34 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
13
Sequence:
Chromosome: IV; NC_003282.8 (9664365..9675672, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Copper transport protein Neighboring gene Acetylcholine-gated chloride channel subunit acc-1;Ligand-gated ion channel 50 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. McGhee JD, et al. Dev Biol, 2007 Feb 15. PMID 17113066
  2. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  3. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article
  4. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
  5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Nuclear hormone receptor family member nhr-34
NP_001023245.1
  • Confirmed by transcript evidence
NP_001129859.1
  • Confirmed by transcript evidence
NP_501716.2
  • Confirmed by transcript evidence
NP_741480.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    9664365..9675672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_171412.5 → NP_741480.1  Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741480.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q21006
    Conserved Domains (2) summary
    cd06960
    Location:19 → 94
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:248 → 419
    HOLI; Ligand binding domain of hormone receptors

  2. NM_069315.7 → NP_501716.2  Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501716.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q21006
    Conserved Domains (2) summary
    cd06960
    Location:133 → 208
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:362 → 533
    HOLI; Ligand binding domain of hormone receptors

  3. NM_001028074.5 → NP_001023245.1  Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023245.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3GWB8, Q21006, Q7JM21, Q95NU3, Q9GTH8
    Conserved Domains (2) summary
    cd06960
    Location:151 → 226
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:380 → 551
    HOLI; Ligand binding domain of hormone receptors

  4. NM_001136387.4 → NP_001129859.1  Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001129859.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q21006
    Conserved Domains (2) summary
    cd06960
    Location:83 → 158
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:312 → 483
    HOLI; Ligand binding domain of hormone receptors
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q21006.3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools