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col-2 Cuticle collagen 2 [ Caenorhabditis elegans ]

Gene ID: 177872, updated on 2-Nov-2024

Summary

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Official Symbol
col-2
Official Full Name
Cuticle collagen 2
Primary source
WormBase:WBGene00000593
Locus tag
CELE_W01B6.7
See related
AllianceGenome:WB:WBGene00000593
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-2 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
2
Sequence:
Chromosome: IV; NC_003282.8 (10084439..10085451, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Kinetochore protein ndc-80 Neighboring gene Transthyretin-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterization of the histone gene family of Caenorhabditis elegans. Roberts SB, et al. J Mol Biol, 1987 Jul 5. PMID 3656446
  2. Structure and expression of Ascaris suum collagen genes: a comparison with Caenorhabditis elegans. Kingston IB, et al. Acta Trop, 1990 Jul. PMID 1978528
  3. Comparison of collagen gene sequences in Ascaris suum and Caenorhabditis elegans. Kingston IB, et al. Mol Biochem Parasitol, 1989 Nov. PMID 2482444
  4. Expression of the Caenorhabditis elegans collagen genes col-1 and col-2 is developmentally regulated. Kramer JM, et al. J Biol Chem, 1985 Feb 10. PMID 2578467
  5. Cuticle collagen genes of Haemonchus contortus and Caenorhabditis elegans are highly conserved. Shamansky LM, et al. Mol Biochem Parasitol, 1989 Nov. PMID 2615789

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cuticle collagen 2
NP_501829.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    10084439..10085451 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069428.4 → NP_501829.1  Cuticle collagen 2 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501829.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P17656
    Conserved Domains (1) summary
    smart01088
    Location:30 → 64
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P17656.1

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