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K08F4.3 Translocon-associated protein subunit beta [ Caenorhabditis elegans ]

Gene ID: 177881, updated on 2-Nov-2024

Summary

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Official Symbol
K08F4.3
Official Full Name
Translocon-associated protein subunit beta
Primary source
WormBase:WBGene00010678
Locus tag
CELE_K08F4.3
See related
AllianceGenome:WB:WBGene00010678
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in endoplasmic reticulum membrane. Orthologous to human SSR2 (signal sequence receptor subunit 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See K08F4.3 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (10129257..10130244)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Ras GTPase-activating protein-binding protein gtbp-1 Neighboring gene ncRNA Neighboring gene Putative sodium-dependent excitatory amino acid transporter glt-3 Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
  2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Translocon-associated protein subunit beta
NP_501843.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    10129257..10130244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069442.6 → NP_501843.1  Translocon-associated protein subunit beta [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501843.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21352
    Conserved Domains (1) summary
    pfam05753
    Location:1 → 180
    TRAP_beta; Translocon-associated protein beta (TRAPB)
Nucleotide Protein
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