U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

F13B12.4 Putative pyridoxal-phosphate dependent protein F13B12.4 [ Caenorhabditis elegans ]

Gene ID: 177937, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
F13B12.4
Official Full Name
Putative pyridoxal-phosphate dependent protein F13B12.4
Primary source
WormBase:WBGene00008732
Locus tag
CELE_F13B12.4
See related
AllianceGenome:WB:WBGene00008732
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in cysteine biosynthetic process. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See F13B12.4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
6
Sequence:
Chromosome: IV; NC_003282.8 (10444583..10449899, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Insulin-like domain-containing protein Neighboring gene Ion transport domain-containing protein Neighboring gene ncRNA Neighboring gene Neprosin domain-containing protein Neighboring gene ncRNA Neighboring gene Tryptophan synthase beta chain-like PALP domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in cysteine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cysteine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Putative pyridoxal-phosphate dependent protein F13B12.4
NP_501928.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    10444583..10449899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069527.9 → NP_501928.1  Putative pyridoxal-phosphate dependent protein F13B12.4 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501928.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q19374
    Conserved Domains (2) summary
    pfam00291
    Location:72 → 376
    PALP; Pyridoxal-phosphate dependent enzyme
    cl00342
    Location:58 → 384
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

RNA

  1. NR_131597.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q19374.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools