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R09H10.5 EGF-like domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177952, updated on 2-Nov-2024

Summary

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Official Symbol
R09H10.5
Official Full Name
EGF-like domain-containing protein
Primary source
WormBase:WBGene00011182
Locus tag
CELE_R09H10.5
See related
AllianceGenome:WB:WBGene00011182
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in intestine. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See R09H10.5 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
23
Sequence:
Chromosome: IV; NC_003282.8 (10621744..10628829, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene SSD domain-containing protein Neighboring gene SEA domain-containing protein Neighboring gene Activin_recp domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large. Waaijers S, et al. BMC Biol, 2016 Aug 9. PMID 27506200, Free PMC Article
  2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
EGF-like domain-containing protein
NP_501964.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    10621744..10628829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069563.5 → NP_501964.2  EGF-like domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501964.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21884
    Conserved Domains (1) summary
    smart00604
    Location:1411 → 1553
    MD; MD domain
Nucleotide Protein
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