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kdin-1 KAP NTPase domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178000, updated on 2-Nov-2024

Summary

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Official Symbol
kdin-1
Official Full Name
KAP NTPase domain-containing protein
Primary source
WormBase:WBGene00006490
Locus tag
CELE_F36H1.2
See related
AllianceGenome:WB:WBGene00006490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable protein kinase regulator activity. Predicted to be involved in nerve growth factor signaling pathway. Predicted to be located in membrane. Is expressed in several structures, including excretory cell; intestine; nervous system; non-striated muscle; and pharynx. Orthologous to human KIDINS220 (kinase D interacting substrate 220). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See kdin-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
26
Sequence:
Chromosome: IV; NC_003282.8 (11038655..11047422)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene peptidylprolyl isomerase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Secreted protein Neighboring gene Tyrosine-protein phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High neural activity accelerates the decline of cognitive plasticity with age in Caenorhabditis elegans. Li Q, et al. Elife, 2020 Nov 24. PMID 33228848, Free PMC Article
  2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in nerve growth factor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
KAP NTPase domain-containing protein
NP_001040942.3
  • Confirmed by transcript evidence
NP_001040943.3
  • Confirmed by transcript evidence
NP_001076687.3
  • Confirmed by transcript evidence
NP_001294014.1
  • Confirmed by transcript evidence
NP_001294015.1
  • Confirmed by transcript evidence
NP_001294016.1
  • Confirmed by transcript evidence
NP_001294017.1
  • Confirmed by transcript evidence
NP_001294018.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    11038655..11047422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047477.7 → NP_001040942.3  KAP NTPase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040942.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20109
    Conserved Domains (4) summary
    PHA02874
    Location:66 → 370
    PHA02874; ankyrin repeat protein; Provisional
    pfam07693
    Location:464 → 973
    KAP_NTPase; KAP family P-loop domain
    sd00045
    Location:95 → 126
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:332 → 419
    Ank_2; Ankyrin repeats (3 copies)

  2. NM_001047478.6 → NP_001040943.3  KAP NTPase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040943.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q27GQ4
    Conserved Domains (4) summary
    PHA02874
    Location:66 → 370
    PHA02874; ankyrin repeat protein; Provisional
    pfam07693
    Location:464 → 973
    KAP_NTPase; KAP family P-loop domain
    sd00045
    Location:95 → 126
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:332 → 419
    Ank_2; Ankyrin repeats (3 copies)

  3. NM_001083218.6 → NP_001076687.3  KAP NTPase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001076687.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q067Y1
    Conserved Domains (4) summary
    PHA02874
    Location:66 → 370
    PHA02874; ankyrin repeat protein; Provisional
    pfam07693
    Location:464 → 1002
    KAP_NTPase; KAP family P-loop domain
    sd00045
    Location:95 → 126
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:332 → 419
    Ank_2; Ankyrin repeats (3 copies)

  4. NM_001307087.3 → NP_001294016.1  KAP NTPase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294016.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A061AD39
    Conserved Domains (4) summary
    PHA02874
    Location:66 → 370
    PHA02874; ankyrin repeat protein; Provisional
    pfam07693
    Location:464 → 1002
    KAP_NTPase; KAP family P-loop domain
    sd00045
    Location:95 → 126
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:332 → 419
    Ank_2; Ankyrin repeats (3 copies)

  5. NM_001307089.3 → NP_001294018.1  KAP NTPase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294018.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A061AL87
    Conserved Domains (4) summary
    PHA02874
    Location:66 → 370
    PHA02874; ankyrin repeat protein; Provisional
    pfam07693
    Location:464 → 976
    KAP_NTPase; KAP family P-loop domain
    sd00045
    Location:95 → 126
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:332 → 419
    Ank_2; Ankyrin repeats (3 copies)

  6. NM_001307086.3 → NP_001294015.1  KAP NTPase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294015.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A061AEC1
    Conserved Domains (4) summary
    PHA02874
    Location:66 → 370
    PHA02874; ankyrin repeat protein; Provisional
    pfam07693
    Location:464 → 1005
    KAP_NTPase; KAP family P-loop domain
    sd00045
    Location:95 → 126
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:332 → 419
    Ank_2; Ankyrin repeats (3 copies)

  7. NM_001307085.3 → NP_001294014.1  KAP NTPase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294014.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A061AD72
    Conserved Domains (4) summary
    PHA02874
    Location:66 → 370
    PHA02874; ankyrin repeat protein; Provisional
    pfam07693
    Location:464 → 1005
    KAP_NTPase; KAP family P-loop domain
    sd00045
    Location:95 → 126
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:332 → 419
    Ank_2; Ankyrin repeats (3 copies)

  8. NM_001307088.3 → NP_001294017.1  KAP NTPase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294017.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A061AJK4
    Conserved Domains (4) summary
    PHA02874
    Location:66 → 370
    PHA02874; ankyrin repeat protein; Provisional
    pfam07693
    Location:464 → 976
    KAP_NTPase; KAP family P-loop domain
    sd00045
    Location:95 → 126
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:332 → 419
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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