mig-38 Abnormal cell migration protein 38 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: mig-38
Official Full Name: Abnormal cell migration protein 38
Primary source: WormBase:WBGene00009587
Locus tag: CELE_F40F11.2
See related: AllianceGenome:WB:WBGene00009587
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable copper ion binding activity; primary methylamine oxidase activity; and quinone binding activity. Predicted to be involved in amine metabolic process. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including enteric muscle; hypodermis; nervous system; reproductive system; and somatic gonad precursor. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See mig-38 in Genome Data Viewer

Location:: chromosome: IV

Exon count:: 11

Sequence:: Chromosome: IV; NC_003282.8 (11594244..11601703)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data suggest that when MIG-38 is depleted, stimulation of a turning pathway is reduced, but MIG-15 could still couple with NCK-1 and promote distal tip cells (DTCs) motility.
Title: mig-38, a novel gene that regulates distal tip cell turning during gonadogenesis in C. elegans hermaphrodites.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F40F11.2 (e-PCR)
- UniSTS:321461

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables copper ion binding	IEA Inferred from Electronic Annotation more info
enables primary methylamine oxidase activity	IEA Inferred from Electronic Annotation more info
enables quinone binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in amine metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Abnormal cell migration protein 38

NP_001255569.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

11594244..11601703

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001268640.2 → NP_001255569.1 Abnormal cell migration protein 38 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001255569.1

Status: REVIEWED

UniProtKB/Swiss-Prot

A6ZJ71

Conserved Domains (1) summary

pfam15249
Location:696 → 783

GLTSCR1; Conserved region of unknown function on GLTSCR protein