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col-129 Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178155, updated on 2-Nov-2024

Summary

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Official Symbol
col-129
Official Full Name
Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
Primary source
WormBase:WBGene00000703
Locus tag
CELE_M18.1
See related
AllianceGenome:WB:WBGene00000703
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is expressed in hypodermis and intestine. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-129 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
2
Sequence:
Chromosome: IV; NC_003282.8 (12108734..12110439, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Monensin-resistant homolog 2 Neighboring gene Asparagine synthetase domain-containing protein Neighboring gene putative dynein light chain 2, cytoplasmic Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiling studies on Caenorhabditis elegans dystrophin mutants dys-1(cx-35) and dys-1(cx18). Towers PR, et al. Genomics, 2006 Nov. PMID 16962739
  2. Integration of behavioural tests and transcriptome sequencing of C. elegans reveals how the nematode responds to peanut shell biochar amendment. Li J, et al. Sci Total Environ, 2020 Mar 10. PMID 31972909
  3. The effects of different biochars on Caenorhabditis elegans and the underlying transcriptomic mechanisms. Chen Y, et al. PLoS One, 2023. PMID 37738276, Free PMC Article
  4. Direct and heterologous approaches to identify the LET-756/FGF interactome. Popovici C, et al. BMC Genomics, 2006 May 3. PMID 16672054, Free PMC Article
  5. Body stiffness is a mechanical property that facilitates contact-mediated mate recognition in Caenorhabditis elegans. Weng JW, et al. Curr Biol, 2023 Sep 11. PMID 37541249, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
NP_001368475.1
  • Confirmed by transcript evidence
NP_502297.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    12108734..12110439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069896.8 → NP_502297.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502297.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21556
    Conserved Domains (2) summary
    pfam01391
    Location:189 → 269
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:6 → 58
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain

  2. NM_001380478.1 → NP_001368475.1  Collagen triple helix repeat protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A061ADV7
    Conserved Domains (1) summary
    pfam01391
    Location:172 → 211
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
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