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bus-12 Transmembrane protein [ Caenorhabditis elegans ]

Gene ID: 178283, updated on 2-Nov-2024

Summary

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Official Symbol
bus-12
Official Full Name
Transmembrane protein
Primary source
WormBase:WBGene00010442
Locus tag
CELE_JC8.12
See related
AllianceGenome:WB:WBGene00010442
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Is expressed in intestine and seam cell. Orthologous to human SLC35D3 (solute carrier family 35 member D3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See bus-12 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
8
Sequence:
Chromosome: IV; NC_003282.8 (13256186..13259076)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Zinc finger, CCHC-type Neighboring gene Transthyretin-like family protein Neighboring gene Transthyretin-like family protein Neighboring gene Transmembrane protein Neighboring gene Synaptojanin Neighboring gene Cleavage and polyadenylation specificity factor subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High concentrations of the anthelmintic diethylcarbamazine paralyze C. elegans independently of TRP-2. Datta R, et al. MicroPubl Biol, 2022. PMID 35622518, Free PMC Article
  2. Independent synchronized control and visualization of interactions between living cells and organisms. Rouger V, et al. Biophys J, 2014 May 20. PMID 24853738, Free PMC Article
  3. The hmsHFRS operon of Xenorhabdus nematophila is required for biofilm attachment to Caenorhabditis elegans. Drace K, et al. Appl Environ Microbiol, 2008 Jul. PMID 18515487, Free PMC Article
  4. Glycosylation genes expressed in seam cells determine complex surface properties and bacterial adhesion to the cuticle of Caenorhabditis elegans. Gravato-Nobre MJ, et al. Genetics, 2011 Jan. PMID 20980242, Free PMC Article
  5. Caenorhabditis elegans mutants resistant to attachment of Yersinia biofilms. Darby C, et al. Genetics, 2007 May. PMID 17339204, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables antiporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in UDP-galactose transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in UDP-glucose transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transmembrane protein
NP_001040957.1
  • Confirmed by transcript evidence
NP_001040958.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    13256186..13259076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047492.4 → NP_001040957.1  Transmembrane protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040957.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ECW1

  2. NM_001047493.6 → NP_001040958.1  Transmembrane protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040958.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2EEM9
Nucleotide Protein
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