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C49C3.9 CUB_2 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178519, updated on 2-Nov-2024

Summary

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Official Symbol
C49C3.9
Official Full Name
CUB_2 domain-containing protein
Primary source
WormBase:WBGene00008199
Locus tag
CELE_C49C3.9
See related
AllianceGenome:WB:WBGene00008199
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in defense response to Gram-negative bacterium and innate immune response. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C49C3.9 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
11
Sequence:
Chromosome: IV; NC_003282.8 (17339640..17342314, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene SPK domain-containing protein Neighboring gene ncRNA Neighboring gene Protein kinase domain-containing protein Neighboring gene ncRNA Neighboring gene Late transcription factor VLTF-4 Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in innate immune response HEP PubMed 
involved_in innate immune response IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
CUB_2 domain-containing protein
NP_503088.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    17339640..17342314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070687.4 → NP_503088.1  CUB_2 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_503088.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XUF6
Nucleotide Protein
Heading Accession and Version

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