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haf-1 HAlF transporter (PGP related) [ Caenorhabditis elegans ]

Gene ID: 178522, updated on 2-Nov-2024

Summary

Official Symbol
haf-1
Official Full Name
HAlF transporter (PGP related)
Primary source
WormBase:WBGene00001811
Locus tag
CELE_C30H6.6
See related
AllianceGenome:WB:WBGene00001811
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Enables peptide transmembrane transporter activity. Involved in mitochondrial unfolded protein response; peptide transport; and protein import into mitochondrial matrix. Located in mitochondrial inner membrane. Orthologous to human ABCB10 (ATP binding cassette subfamily B member 10). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See haf-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
9
Sequence:
Chromosome: IV; NC_003282.8 (17376427..17379310)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Apple domain-containing protein Neighboring gene Altered inheritance of mitochondria protein 36, mitochondrial Neighboring gene 2-oxoacid dehydrogenase acyltransferase catalytic domain-containing protein Neighboring gene protein-disulfide reductase

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 
enables ATPase-coupled transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables peptide transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
involved_in mitochondrial unfolded protein response IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in peptide transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein import into mitochondrial matrix IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to chemical IEA
Inferred from Electronic Annotation
more info
 
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrial inner membrane HDA PubMed 

General protein information

Preferred Names
HAlF transporter (PGP related)
NP_503098.2
  • Product from WormBase gene class haf;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    17376427..17379310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070697.7NP_503098.2  HAlF transporter (PGP related) [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_503098.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O45278
    Conserved Domains (3) summary
    COG1132
    Location:82641
    MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]
    cl00549
    Location:93363
    ABC_membrane; ABC transporter transmembrane region
    cl21455
    Location:413641
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases