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Y108G3AL.2 Pre-mRNA-splicing factor 38 [ Caenorhabditis elegans ]

Gene ID: 178546, updated on 2-Nov-2024

Summary

Official Symbol
Y108G3AL.2
Official Full Name
Pre-mRNA-splicing factor 38
Primary source
WormBase:WBGene00022434
Locus tag
CELE_Y108G3AL.2
See related
AllianceGenome:WB:WBGene00022434
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Is expressed in nervous system. Orthologous to human PRPF38B (pre-mRNA processing factor 38B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See Y108G3AL.2 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (166987..176823)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Choline/carnitine acyltransferase domain-containing protein Neighboring gene Transcription initiation factor IIB Neighboring gene Cilia- and flagella-associated protein 36 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Cullin family profile domain-containing protein;Cullin protein neddylation domain-containing protein;Cullin-3 Neighboring gene AT-rich interactive domain-containing protein arid-1

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of precatalytic spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Pre-mRNA-splicing factor 38
NP_503148.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    166987..176823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070747.5NP_503148.1  Pre-mRNA-splicing factor 38 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_503148.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95Y35
    Conserved Domains (1) summary
    pfam03371
    Location:55236
    PRP38; PRP38 family