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nhr-15 Nuclear Hormone Receptor family [ Caenorhabditis elegans ]

Gene ID: 178558, updated on 2-Nov-2024

Summary

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Official Symbol
nhr-15
Official Full Name
Nuclear Hormone Receptor family
Primary source
WormBase:WBGene00003614
Locus tag
CELE_F33E11.1
See related
AllianceGenome:WB:WBGene00003614
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in head muscle and pharynx. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nhr-15 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_003283.11 (312721..323650)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 1 regulatory subunit 21 N-terminal domain-containing protein Neighboring gene PHD finger protein 10;PHD-type domain-containing protein Neighboring gene ncRNA Neighboring gene ABC transporter domain-containing protein Neighboring gene ncRNA Neighboring gene DM domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Nuclear Hormone Receptor family
NP_001379919.1
  • Product from WormBase gene class nhr;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    312721..323650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001392465.1 → NP_001379919.1  Nuclear Hormone Receptor family [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    O61854
    Conserved Domains (2) summary
    smart00399
    Location:32 → 105
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    smart00430
    Location:182 → 340
    HOLI; Ligand binding domain of hormone receptors

RNA

  1. NR_132474.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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