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C14C6.5 ShKT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178574, updated on 2-Nov-2024

Summary

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Official Symbol
C14C6.5
Official Full Name
ShKT domain-containing protein
Primary source
WormBase:WBGene00015759
Locus tag
CELE_C14C6.5
See related
AllianceGenome:WB:WBGene00015759
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in innate immune response. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C14C6.5 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (536628..537418)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nuclear receptor domain-containing protein Neighboring gene NR LBD domain-containing protein Neighboring gene Nuclear Hormone Receptor family Neighboring gene L-Fucosyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in innate immune response HEP PubMed 

General protein information

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Preferred Names
ShKT domain-containing protein
NP_001300054.1
  • Confirmed by transcript evidence
NP_001379668.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    536628..537418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001392468.1 → NP_001379668.1  ShKT domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44667
    Conserved Domains (2) summary
    pfam04942
    Location:23 → 52
    CC; CC domain
    pfam01549
    Location:137 → 166
    ShK; ShK domain-like

  2. NM_001313125.3 → NP_001300054.1  ShKT domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AXM4
    Conserved Domains (1) summary
    pfam01549
    Location:73 → 102
    ShK; ShK domain-like
Nucleotide Protein
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