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phat-3 ShKT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178809, updated on 2-Nov-2024

Summary

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Official Symbol
phat-3
Official Full Name
ShKT domain-containing protein
Primary source
WormBase:WBGene00016782
Locus tag
CELE_C49G7.4
See related
AllianceGenome:WB:WBGene00016782
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in nematode pharyngeal gland morphogenesis. Is expressed in pharyngeal gland cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See phat-3 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (4043932..4044951)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Anoctamin;Glycosyltransferase family 92 protein Neighboring gene Infection Response Gene Neighboring gene ShKT domain-containing protein Neighboring gene Serpentine Receptor, class H

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An abundantly expressed mucin-like protein from Toxocara canis infective larvae: the precursor of the larval surface coat glycoproteins. Gems D, et al. Proc Natl Acad Sci U S A, 1996 Feb 20. PMID 8643687, Free PMC Article
  2. The HLH-6 transcription factor regulates C. elegans pharyngeal gland development and function. Smit RB, et al. PLoS Genet, 2008 Oct. PMID 18927627, Free PMC Article
  3. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in nematode pharyngeal gland morphogenesis IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
ShKT domain-containing protein
NP_504129.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    4043932..4044951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071728.6 → NP_504129.1  ShKT domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16225
    Conserved Domains (1) summary
    pfam01549
    Location:158 → 193
    ShK; ShK domain-like
Nucleotide Protein
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