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phat-7 ShKT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178810, updated on 18-Sep-2024

Summary

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Official Symbol
phat-7
Official Full Name
ShKT domain-containing protein
Primary source
WormBase:WBGene00016781
Locus tag
CELE_C49G7.3
See related
AllianceGenome:WB:WBGene00016781
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See phat-7 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (4046422..4047433)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Infection Response Gene Neighboring gene ShKT domain-containing protein Neighboring gene Serpentine Receptor, class H Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
ShKT domain-containing protein
NP_504130.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    4046422..4047433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071729.7 → NP_504130.1  ShKT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504130.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16226
    Conserved Domains (1) summary
    pfam01549
    Location:120 → 154
    ShK; ShK domain-like
Nucleotide Protein
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